dorsal/arxiv
View SchemaCollapse of a single polymer chain: Effects of chain stiffness and attraction range
| Authors | Yanyan Zhu, Haim Diamant, David Andelman |
|---|---|
| Categories | |
| ArXiv ID | 2601.09908vv1 |
| URL | https://arxiv.org/abs/2601.09908 |
| License | http://arxiv.org/licenses/nonexclusive-distrib/1.0/ |
Abstract
Chain-like macromolecules in solution, whether biological or synthetic, transform from an extended conformation to a compact one when temperature or other system parameters change. This collapse transition is relevant in various phenomena, including DNA condensation, protein folding, and the behavior of polymers in solution. We investigate the interplay of chain stiffness and range of attraction between monomers in the collapse of a single polymer chain. We use Monte Carlo simulations based on the pruned-enriched Rosenbluth method. Two distinct behaviors are found depending on chain stiffness (represented by the persistence length lp) and attraction range rc. When lp is larger than rc, the chain collapses sharply with decreasing temperature, whereas if lp is smaller than rc, it contracts gradually. Notably, in the regime of small lp and large rc, this rounding into a gradual compaction persists upon increasing the chain length and may remain in place in the limit of infinite chain length. Furthermore, for small rc, the transition temperature (theta-temperature) increases with lp, whereas for large rc the theta-temperature decreases with lp. Thus, stiffness promotes collapse for small rc but suppresses it for large rc. Our findings are in agreement with recent experiments on the contraction of single-stranded RNA as compared to double-stranded DNA, and provide valuable insights for understanding polymer collapse and the essential polymer parameters affecting it.
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"abstract": "Chain-like macromolecules in solution, whether biological or synthetic, transform from an extended conformation to a compact one when temperature or other system parameters change. This collapse transition is relevant in various phenomena, including DNA condensation, protein folding, and the behavior of polymers in solution. We investigate the interplay of chain stiffness and range of attraction between monomers in the collapse of a single polymer chain. We use Monte Carlo simulations based on the pruned-enriched Rosenbluth method. Two distinct behaviors are found depending on chain stiffness (represented by the persistence length lp) and attraction range rc. When lp is larger than rc, the chain collapses sharply with decreasing temperature, whereas if lp is smaller than rc, it contracts gradually. Notably, in the regime of small lp and large rc, this rounding into a gradual compaction persists upon increasing the chain length and may remain in place in the limit of infinite chain length. Furthermore, for small rc, the transition temperature (theta-temperature) increases with lp, whereas for large rc the theta-temperature decreases with lp. Thus, stiffness promotes collapse for small rc but suppresses it for large rc. Our findings are in agreement with recent experiments on the contraction of single-stranded RNA as compared to double-stranded DNA, and provide valuable insights for understanding polymer collapse and the essential polymer parameters affecting it.",
"arxiv_id": "2601.09908",
"authors": [
"Yanyan Zhu",
"Haim Diamant",
"David Andelman"
],
"categories": [
"cond-mat.soft"
],
"license": "http://arxiv.org/licenses/nonexclusive-distrib/1.0/",
"title": "Collapse of a single polymer chain: Effects of chain stiffness and attraction range",
"url": "https://arxiv.org/abs/2601.09908",
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